PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099400.1
Common NamePOPTR_0019s13090g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 223aa    MW: 25035.3 Da    PI: 9.4134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-093181355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +  + +Er+RR++++s ++ L +llP+ +    ++     +   +A++YIksL+
  Potri.019G099400.1 31 TERKVVERNRRNQMKSLYSSLNSLLPNqN---FKEAQPLPDQIDRAINYIKSLE 81
                        567899*********************55...677799999***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.0842880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-112898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-113098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-63281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-43486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRFPRGVMVA KTGGTIMQSR SGRSNISSTK TERKVVERNR RNQMKSLYSS LNSLLPNQNF  60
KEAQPLPDQI DRAINYIKSL EEKLEKAREK KESLTRSRKG SYTCTFDPLS SAASKSPQLK  120
IHEIGSVREI VLTSGLGNQF LFYEIISILH EEGVEVVSAN FQALGDSFFH IVHAQMKGSA  180
DGFGAARVTE RLNRFISGST SEIELDSELW DFANHPETNW EF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371551.11e-147hypothetical protein POPTR_0019s13090g
TrEMBLU5FEU01e-147U5FEU0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13090.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-21bHLH family protein